Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs13279341 chr8:140990881 G/A 6.29E-7 173 27.33 18.6 10.93 KM Plot
PCPG rs13336131 chr16:1697025 C/T 0 176 25.47 19.3 2.93 KM Plot
PCPG rs13336178 chr16:1667071 C/T 0 176 25.53 22.77 2.93 KM Plot
PCPG rs13336753 chr16:89595261 T/C 0.000303 177 28.58 25.53 19.2 KM Plot
PCPG rs13383583 chr2:209978497 G/A 5.41E-8 176 20.03 23.53 27.27 KM Plot
PCPG rs13388304 chr2:236192847 C/T 3.43E-7 171 26.58 24.7 3.07 KM Plot
PCPG rs13389663 chr2:176132982 T/G 0.000138 175 25.4 28.38 6.62 KM Plot
PCPG rs13393069 chr2:24324591 C/T 0.000122 176 25.47 26.92 17.43 KM Plot
PCPG rs13393394 chr2:242516498 C/A 4.19E-11 178 25.87 24.85 10.3 KM Plot
PCPG rs13394881 chr2:176196474 A/T 0.000124 177 25.28 28.47 6.62 KM Plot
PCPG rs13403998 chr2:242560241 C/T 3.41E-5 174 24.53 28.42 20.2 KM Plot
PCPG rs13404054 chr2:24297751 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs13408129 chr2:24316723 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs13408226 chr2:24316777 G/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs13409729 chr2:24325501 A/G 0.000114 177 25.4 26.92 17.43 KM Plot